IntaRNA::AccessibilityBasePair Member List

This is the complete list of members for IntaRNA::AccessibilityBasePair, including all inherited members.

accConstraint	IntaRNA::Accessibility	protected
Accessibility(const RnaSequence &sequence, const size_t maxLength, const AccessibilityConstraint *const accConstr)	IntaRNA::Accessibility	inline
AccessibilityBasePair(const RnaSequence &seq, const size_t maxLength, const AccessibilityConstraint *const accConstr, const E_type basePairEnergy=Ekcal_2_E(-1.0), const Z_type RT=1, const size_t minLoopLength=3)	IntaRNA::AccessibilityBasePair
basePairEnergy	IntaRNA::AccessibilityBasePair	protected
basePairWeight	IntaRNA::AccessibilityBasePair	protected
checkIndices(const size_t from, const size_t to) const	IntaRNA::Accessibility	inlineprotectedvirtual
decomposeByMaxED(const size_t maxRangeLength, const size_t winSize, const size_t minRangeLength) const	IntaRNA::Accessibility
decomposeByMaxED(IndexRangeList &ranges, const E_type maxED, const size_t minRangeLength) const	IntaRNA::Accessibility
ED_UPPER_BOUND	IntaRNA::Accessibility	static
getAccConstraint() const	IntaRNA::Accessibility	inlinevirtual
getED(const size_t from, const size_t to) const	IntaRNA::AccessibilityBasePair	virtual
getMaxLength() const	IntaRNA::Accessibility	inlinevirtual
getSequence() const	IntaRNA::Accessibility	inlinevirtual
logPu	IntaRNA::AccessibilityBasePair	protected
maxLength	IntaRNA::Accessibility	protected
minLoopLength	IntaRNA::AccessibilityBasePair	protected
RT	IntaRNA::AccessibilityBasePair	protected
seq	IntaRNA::Accessibility	protected
writeBinary(std::ostream &out) const	IntaRNA::Accessibility	virtual
writeBinary(std::ostream &out, const UpperBandedMatrix< E_type > *matrix) const	IntaRNA::Accessibility	protected
writeRNAplfold_ED_text(std::ostream &out) const	IntaRNA::Accessibility	inline
writeRNAplfold_Pu_text(std::ostream &out, const Z_type RT) const	IntaRNA::Accessibility	inline
writeRNAplfold_text(std::ostream &out, const Z_type RT, const bool writeProbs) const	IntaRNA::Accessibility	protected
~Accessibility()	IntaRNA::Accessibility	inlinevirtual
~AccessibilityBasePair()	IntaRNA::AccessibilityBasePair	virtual