IntaRNA::AccessibilityConstraint Member List

This is the complete list of members for IntaRNA::AccessibilityConstraint, including all inherited members.

AccessibilityConstraint(const size_t length, const size_t maxBpSpan, const std::string &shapeFile, const std::string &shapeMethod, const std::string &shapeConversion)	IntaRNA::AccessibilityConstraint	inline
AccessibilityConstraint(const AccessibilityConstraint &toCopy, const bool reverseIndices=false)	IntaRNA::AccessibilityConstraint	inline
AccessibilityConstraint(const RnaSequence &seq, const std::string &dotBracket, const size_t maxBpSpan, const std::string &shapeFile, const std::string &shapeMethod, const std::string &shapeConversion)	IntaRNA::AccessibilityConstraint
accessible	IntaRNA::AccessibilityConstraint	protected
blocked	IntaRNA::AccessibilityConstraint	protected
dotBracket_accessible	IntaRNA::AccessibilityConstraint	static
dotBracket_blocked	IntaRNA::AccessibilityConstraint	static
dotBracket_constraints	IntaRNA::AccessibilityConstraint	static
dotBracket_paired	IntaRNA::AccessibilityConstraint	static
dotBracket_unconstrained	IntaRNA::AccessibilityConstraint	static
dotBracketAlphabet	IntaRNA::AccessibilityConstraint	static
getMaxBpSpan() const	IntaRNA::AccessibilityConstraint	inline
getShapeConversion() const	IntaRNA::AccessibilityConstraint	inline
getShapeFile() const	IntaRNA::AccessibilityConstraint	inline
getShapeMethod() const	IntaRNA::AccessibilityConstraint	inline
getVrnaDotBracket(const size_t i) const	IntaRNA::AccessibilityConstraint	inline
isAccessible(const size_t i) const	IntaRNA::AccessibilityConstraint	inline
isEmpty() const	IntaRNA::AccessibilityConstraint	inline
isMarkedAccessible(const size_t i) const	IntaRNA::AccessibilityConstraint	inline
isMarkedBlocked(const size_t i) const	IntaRNA::AccessibilityConstraint	inline
isMarkedPaired(const size_t i) const	IntaRNA::AccessibilityConstraint	inline
isUnconstrained(const size_t i) const	IntaRNA::AccessibilityConstraint	inline
length	IntaRNA::AccessibilityConstraint	protected
maxBpSpan	IntaRNA::AccessibilityConstraint	protected
operator<<	IntaRNA::AccessibilityConstraint	friend
operator=(const AccessibilityConstraint &c)	IntaRNA::AccessibilityConstraint	inline
paired	IntaRNA::AccessibilityConstraint	protected
regex	IntaRNA::AccessibilityConstraint	static
regexShapeConversion	IntaRNA::AccessibilityConstraint	static
regexShapeMethod	IntaRNA::AccessibilityConstraint	static
regionIndexList	IntaRNA::AccessibilityConstraint	static
screenDotBracket(const std::string &dotBracket, const char marker, IndexRangeList &storage)	IntaRNA::AccessibilityConstraint	protectedstatic
shapeConversion	IntaRNA::AccessibilityConstraint	protected
shapeFile	IntaRNA::AccessibilityConstraint	protected
shapeMethod	IntaRNA::AccessibilityConstraint	protected
~AccessibilityConstraint()	IntaRNA::AccessibilityConstraint	inlinevirtual