IntaRNA::AccessibilityFromStream Member List

This is the complete list of members for IntaRNA::AccessibilityFromStream, including all inherited members.

accConstraint	IntaRNA::Accessibility	protected
Accessibility(const RnaSequence &sequence, const size_t maxLength, const AccessibilityConstraint *const accConstr)	IntaRNA::Accessibility	inline
AccessibilityFromStream(const RnaSequence &sequence, const size_t maxLength, const AccessibilityConstraint *const accConstraint, std::istream &inStream, const InStreamType inStreamType, const Z_type RT)	IntaRNA::AccessibilityFromStream
availMaxLength	IntaRNA::AccessibilityFromStream	protected
checkIndices(const size_t from, const size_t to) const	IntaRNA::Accessibility	inlineprotectedvirtual
decomposeByMaxED(const size_t maxRangeLength, const size_t winSize, const size_t minRangeLength) const	IntaRNA::Accessibility
decomposeByMaxED(IndexRangeList &ranges, const E_type maxED, const size_t minRangeLength) const	IntaRNA::Accessibility
ED_RNAplfold_Text enum value	IntaRNA::AccessibilityFromStream
ED_UPPER_BOUND	IntaRNA::Accessibility	static
EdMatrix typedef	IntaRNA::AccessibilityFromStream	protected
edValues	IntaRNA::AccessibilityFromStream	protected
getAccConstraint() const	IntaRNA::Accessibility	inlinevirtual
getED(const size_t from, const size_t to) const	IntaRNA::AccessibilityFromStream	inlinevirtual
getMaxLength() const	IntaRNA::AccessibilityFromStream	inlinevirtual
getSequence() const	IntaRNA::Accessibility	inlinevirtual
InStreamType enum name	IntaRNA::AccessibilityFromStream
IntaRNA_Binary enum value	IntaRNA::AccessibilityFromStream
maxLength	IntaRNA::Accessibility	protected
parseBinary(std::istream &inStream)	IntaRNA::AccessibilityFromStream	protected
parseED_RNAplfold_text(std::istream &inStream)	IntaRNA::AccessibilityFromStream	inlineprotected
parsePu_RNAplfold_text(std::istream &inStream, const Z_type RT)	IntaRNA::AccessibilityFromStream	inlineprotected
parseRNAplfold_text(std::istream &inStream, const Z_type RT, const bool parseProbs)	IntaRNA::AccessibilityFromStream	protected
Pu_RNAplfold_Text enum value	IntaRNA::AccessibilityFromStream
seq	IntaRNA::Accessibility	protected
writeBinary(std::ostream &out) const override	IntaRNA::AccessibilityFromStream	inlinevirtual
IntaRNA::Accessibility::writeBinary(std::ostream &out, const UpperBandedMatrix< E_type > *matrix) const	IntaRNA::Accessibility	protected
writeRNAplfold_ED_text(std::ostream &out) const	IntaRNA::Accessibility	inline
writeRNAplfold_Pu_text(std::ostream &out, const Z_type RT) const	IntaRNA::Accessibility	inline
writeRNAplfold_text(std::ostream &out, const Z_type RT, const bool writeProbs) const	IntaRNA::Accessibility	protected
~Accessibility()	IntaRNA::Accessibility	inlinevirtual
~AccessibilityFromStream()	IntaRNA::AccessibilityFromStream	virtual