| fillHelix(const size_t i1, const size_t j1, const size_t i2, const size_t j2) | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| fillHelixSeed(const size_t i1, const size_t j1, const size_t i2, const size_t j2) | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getConstraint() const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getHelixE(const size_t i1, const size_t i2) const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getHelixHandler(const InteractionEnergy &energy, const HelixConstraint &helixConstraint, SeedHandler *const seedHandler=NULL) | IntaRNA::HelixHandler | static |
| getHelixLength1(const size_t i1, const size_t i2) const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getHelixLength2(const size_t i1, const size_t i2) const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getHelixSeedE(const size_t i1, const size_t i2) const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getHelixSeedLength1(const size_t i1, const size_t i2) const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getHelixSeedLength2(const size_t i1, const size_t i2) const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getInteractionEnergy() const | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| getOffset1() const | IntaRNA::HelixHandlerIdxOffset | inline |
| getOffset2() const | IntaRNA::HelixHandlerIdxOffset | inline |
| helixConstraintOffset | IntaRNA::HelixHandlerIdxOffset | protected |
| HelixHandler() | IntaRNA::HelixHandler | inline |
| HelixHandlerIdxOffset(HelixHandler *helixHandler) | IntaRNA::HelixHandlerIdxOffset | inline |
| helixHandlerOriginal | IntaRNA::HelixHandlerIdxOffset | protected |
| idxOffset1 | IntaRNA::HelixHandlerIdxOffset | protected |
| idxOffset2 | IntaRNA::HelixHandlerIdxOffset | protected |
| seedHandlerIdxOffset | IntaRNA::HelixHandlerIdxOffset | protected |
| setOffset1(size_t offset1) | IntaRNA::HelixHandlerIdxOffset | inline |
| setOffset2(size_t offset2) | IntaRNA::HelixHandlerIdxOffset | inline |
| setSeedHandler(SeedHandler &seedHandler) | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| traceBackHelix(Interaction &interaction, const size_t i1, const size_t i2) | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| traceBackHelixSeed(Interaction &interaction, const size_t i1, const size_t i2) | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
| ~HelixHandler() | IntaRNA::HelixHandler | inlinevirtual |
| ~HelixHandlerIdxOffset() | IntaRNA::HelixHandlerIdxOffset | inlinevirtual |
