IntaRNA::HelixHandlerNoBulgeMax Member List

This is the complete list of members for IntaRNA::HelixHandlerNoBulgeMax, including all inherited members.

BP typedef	IntaRNA::HelixHandlerNoBulgeMax	protected
decodeHelixSeedLength1(const size_t code) const	IntaRNA::HelixHandlerNoBulgeMax	inlineprotected
decodeHelixSeedLength2(const size_t code) const	IntaRNA::HelixHandlerNoBulgeMax	inlineprotected
encodeHelixSeedLength(const size_t l1, const size_t l2) const	IntaRNA::HelixHandlerNoBulgeMax	inlineprotected
energy	IntaRNA::HelixHandlerNoBulgeMax	protected
fillHelix(const size_t i1, const size_t j1, const size_t i2, const size_t j2)	IntaRNA::HelixHandlerNoBulgeMax	virtual
fillHelixSeed(const size_t i1, const size_t j1, const size_t i2, const size_t j2)	IntaRNA::HelixHandlerNoBulgeMax	virtual
getConstraint() const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getHelixE(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getHelixHandler(const InteractionEnergy &energy, const HelixConstraint &helixConstraint, SeedHandler *const seedHandler=NULL)	IntaRNA::HelixHandler	static
getHelixLength1(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getHelixLength2(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getHelixSeedE(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getHelixSeedLength1(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getHelixSeedLength2(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
getInteractionEnergy() const	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
helix	IntaRNA::HelixHandlerNoBulgeMax	protected
helixConstraint	IntaRNA::HelixHandlerNoBulgeMax	protected
HelixData typedef	IntaRNA::HelixHandlerNoBulgeMax
HelixHandler()	IntaRNA::HelixHandler	inline
HelixHandlerNoBulgeMax(const InteractionEnergy &energy, const HelixConstraint &helixConstraint, SeedHandler *const seedHandler=NULL)	IntaRNA::HelixHandlerNoBulgeMax	inline
HelixHash typedef	IntaRNA::HelixHandlerNoBulgeMax
helixSeed	IntaRNA::HelixHandlerNoBulgeMax	protected
seedHandler	IntaRNA::HelixHandlerNoBulgeMax	protected
setSeedHandler(SeedHandler &seedHandler)	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual
traceBackHelix(Interaction &interaction, const size_t i1, const size_t i2)	IntaRNA::HelixHandlerNoBulgeMax	virtual
traceBackHelixSeed(Interaction &interaction, const size_t i1, size_t i2)	IntaRNA::HelixHandlerNoBulgeMax	virtual
~HelixHandler()	IntaRNA::HelixHandler	inlinevirtual
~HelixHandlerNoBulgeMax()	IntaRNA::HelixHandlerNoBulgeMax	inlinevirtual