IntaRNA::HelixHandlerUnpaired Member List

This is the complete list of members for IntaRNA::HelixHandlerUnpaired, including all inherited members.

decodeHelixLength1(const size_t code) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
decodeHelixLength2(const size_t code) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
decodeHelixSeedLength1(const size_t code) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
decodeHelixSeedLength2(const size_t code) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
encodeHelixLength(const size_t l1, const size_t l2) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
encodeHelixSeedLength(const size_t l1, const size_t l2) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
energy	IntaRNA::HelixHandlerUnpaired	protected
fillHelix(const size_t i1, const size_t j1, const size_t i2, const size_t j2)	IntaRNA::HelixHandlerUnpaired	virtual
fillHelixSeed(const size_t i1, const size_t j1, const size_t i2, const size_t j2)	IntaRNA::HelixHandlerUnpaired	virtual
getBestBP(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlineprotected
getConstraint() const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixE(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixE(const size_t i1, const size_t i2, const size_t bp)	IntaRNA::HelixHandlerUnpaired	inlineprotected
getHelixHandler(const InteractionEnergy &energy, const HelixConstraint &helixConstraint, SeedHandler *const seedHandler=NULL)	IntaRNA::HelixHandler	static
getHelixLength1(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixLength1(const size_t i1, const size_t i2, const size_t bp) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixLength2(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixLength2(const size_t i1, const size_t i2, const size_t bp) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixSeedE(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixSeedLength1(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getHelixSeedLength2(const size_t i1, const size_t i2) const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
getInteractionEnergy() const	IntaRNA::HelixHandlerUnpaired	inlinevirtual
helix	IntaRNA::HelixHandlerUnpaired	protected
helixConstraint	IntaRNA::HelixHandlerUnpaired	protected
helixE_rec	IntaRNA::HelixHandlerUnpaired	protected
HelixHandler()	IntaRNA::HelixHandler	inline
HelixHandlerUnpaired(const InteractionEnergy &energy, const HelixConstraint &helixConstraint, SeedHandler *const seedHandler=NULL)	IntaRNA::HelixHandlerUnpaired	inline
HelixIndex typedef	IntaRNA::HelixHandlerUnpaired
HelixMatrix typedef	IntaRNA::HelixHandlerUnpaired
HelixRecMatrix typedef	IntaRNA::HelixHandlerUnpaired
helixSeed	IntaRNA::HelixHandlerUnpaired	protected
HelixSeedMatrix typedef	IntaRNA::HelixHandlerUnpaired
offset1	IntaRNA::HelixHandlerUnpaired	protected
offset2	IntaRNA::HelixHandlerUnpaired	protected
seedHandler	IntaRNA::HelixHandlerUnpaired	protected
setHelixPair(const size_t i1, const size_t i2, const size_t bp, const E_type E, const size_t length)	IntaRNA::HelixHandlerUnpaired	inlineprotected
setSeedHandler(SeedHandler &seedHandler)	IntaRNA::HelixHandlerUnpaired	inlinevirtual
traceBackHelix(Interaction &interaction, const size_t i1, const size_t i2)	IntaRNA::HelixHandlerUnpaired	inlinevirtual
traceBackHelix(Interaction &interaction, const size_t i1, const size_t i2, const size_t bp)	IntaRNA::HelixHandlerUnpaired	protected
traceBackHelixSeed(Interaction &interaction, const size_t i1, const size_t i2)	IntaRNA::HelixHandlerUnpaired	virtual
~HelixHandler()	IntaRNA::HelixHandler	inlinevirtual
~HelixHandlerUnpaired()	IntaRNA::HelixHandlerUnpaired	inlinevirtual