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IntaRNA 3.4.1
RNA-RNA interaction prediction | C++ API
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This is the complete list of members for IntaRNA::InteractionEnergy, including all inherited members.
| accS1 | IntaRNA::InteractionEnergy | protected |
| accS2 | IntaRNA::InteractionEnergy | protected |
| areComplementary(const size_t i1, const size_t i2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| energyAdd | IntaRNA::InteractionEnergy | protected |
| energyWithDangles | IntaRNA::InteractionEnergy | protected |
| ES_multi_1only enum value | IntaRNA::InteractionEnergy | |
| ES_multi_2only enum value | IntaRNA::InteractionEnergy | |
| ES_multi_both enum value | IntaRNA::InteractionEnergy | |
| ES_multi_mode enum name | IntaRNA::InteractionEnergy | |
| getAccessibility1() const | IntaRNA::InteractionEnergy | inlinevirtual |
| getAccessibility2() const | IntaRNA::InteractionEnergy | inlinevirtual |
| getBasePair(const size_t i1, const size_t i2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getBoltzmannWeight(const E_type energy) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getBoltzmannWeight(const Z_type energy) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getE(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type hybridE) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getE(const Z_type Z) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getE_contributions(const Interaction &interaction) const | IntaRNA::InteractionEnergy | virtual |
| getE_danglingLeft(const size_t i1, const size_t i2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_danglingRight(const size_t j1, const size_t j2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_endLeft(const size_t i1, const size_t i2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_endRight(const size_t j1, const size_t j2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_init() const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_interLeft(const size_t i1, const size_t j1, const size_t i2, const size_t j2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_multi(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const ES_multi_mode ES_mode) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getE_multiClosing() const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_multiHelix(const size_t j1, const size_t j2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getE_multiUnpaired(const size_t numUnpaired) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getEall1() const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getEall2() const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getED1(const size_t i1, const size_t j1) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getED2(const size_t i2, const size_t j2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getEnergyAdd() const | IntaRNA::InteractionEnergy | inlinevirtual |
| getES1(const size_t i1, const size_t j1) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getES2(const size_t i2, const size_t j2) const =0 | IntaRNA::InteractionEnergy | pure virtual |
| getIndex1(const Interaction::BasePair &bp) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getIndex2(const Interaction::BasePair &bp) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getMaxInternalLoopSize1() const | IntaRNA::InteractionEnergy | inline |
| getMaxInternalLoopSize2() const | IntaRNA::InteractionEnergy | inline |
| getPr_danglingLeft(const size_t i1, const size_t j1, const size_t i2, const size_t j2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getPr_danglingRight(const size_t i1, const size_t j1, const size_t i2, const size_t j2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| getRT() const =0 | IntaRNA::InteractionEnergy | pure virtual |
| InteractionEnergy(const Accessibility &accS1, const ReverseAccessibility &accS2, const size_t maxInternalLoopSize1, const size_t maxInternalLoopSize2, const E_type energyAdd, const bool energyWithDangle, const bool internalLoopGU) | IntaRNA::InteractionEnergy | inline |
| internalLoopGU | IntaRNA::InteractionEnergy | protected |
| isAccessible1(const size_t i) const | IntaRNA::InteractionEnergy | inlinevirtual |
| isAccessible2(const size_t i) const | IntaRNA::InteractionEnergy | inlinevirtual |
| isAllowedLoopRegion(const RnaSequence &seq, const size_t i, const size_t j, const size_t maxInternalLoopSize) | IntaRNA::InteractionEnergy | inlineprotectedstatic |
| isGU(const size_t i1, const size_t i2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| isInternalLoopGUallowed() const | IntaRNA::InteractionEnergy | inline |
| isValidInternalLoop(const size_t i1, const size_t j1, const size_t i2, const size_t j2) const | IntaRNA::InteractionEnergy | inlinevirtual |
| maxInternalLoopSize1 | IntaRNA::InteractionEnergy | protected |
| maxInternalLoopSize2 | IntaRNA::InteractionEnergy | protected |
| size1() const | IntaRNA::InteractionEnergy | inlinevirtual |
| size2() const | IntaRNA::InteractionEnergy | inlinevirtual |
| ~InteractionEnergy() | IntaRNA::InteractionEnergy | inlinevirtual |
1.9.8