IntaRNA 3.4.1
RNA-RNA interaction prediction | C++ API
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IntaRNA::InteractionEnergyIdxOffset Member List

This is the complete list of members for IntaRNA::InteractionEnergyIdxOffset, including all inherited members.

accS1IntaRNA::InteractionEnergyprotected
accS2IntaRNA::InteractionEnergyprotected
areComplementary(const size_t i1, const size_t i2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
energyAddIntaRNA::InteractionEnergyprotected
energyOriginalIntaRNA::InteractionEnergyIdxOffsetprotected
energyWithDanglesIntaRNA::InteractionEnergyprotected
ES_multi_1only enum valueIntaRNA::InteractionEnergy
ES_multi_2only enum valueIntaRNA::InteractionEnergy
ES_multi_both enum valueIntaRNA::InteractionEnergy
ES_multi_mode enum nameIntaRNA::InteractionEnergy
getAccessibility1() constIntaRNA::InteractionEnergyinlinevirtual
getAccessibility2() constIntaRNA::InteractionEnergyinlinevirtual
getBasePair(const size_t i1, const size_t i2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getBoltzmannWeight(const E_type energy) constIntaRNA::InteractionEnergyinlinevirtual
getBoltzmannWeight(const Z_type energy) constIntaRNA::InteractionEnergyinlinevirtual
getE(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type hybridE) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE(const Z_type Z) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_contributions(const Interaction &interaction) constIntaRNA::InteractionEnergyvirtual
getE_danglingLeft(const size_t i1, const size_t i2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_danglingRight(const size_t j1, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_endLeft(const size_t i1, const size_t i2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_endRight(const size_t j1, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_init() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_interLeft(const size_t i1, const size_t j1, const size_t i2, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_multi(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const ES_multi_mode ES_mode) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_multiClosing() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_multiHelix(const size_t j1, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getE_multiUnpaired(const size_t numUnpaired) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getEall1() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getEall2() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getED1(const size_t i1, const size_t j1) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getED2(const size_t i2, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getEnergyAdd() constIntaRNA::InteractionEnergyinlinevirtual
getES1(const size_t i1, const size_t j1) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getES2(const size_t i2, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getIndex1(const Interaction::BasePair &bp) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getIndex2(const Interaction::BasePair &bp) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getMaxInternalLoopSize1() constIntaRNA::InteractionEnergyinline
getMaxInternalLoopSize2() constIntaRNA::InteractionEnergyinline
getOffset1() constIntaRNA::InteractionEnergyIdxOffsetinline
getOffset2() constIntaRNA::InteractionEnergyIdxOffsetinline
getPr_danglingLeft(const size_t i1, const size_t j1, const size_t i2, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getPr_danglingRight(const size_t i1, const size_t j1, const size_t i2, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
getRT() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
InteractionEnergy(const Accessibility &accS1, const ReverseAccessibility &accS2, const size_t maxInternalLoopSize1, const size_t maxInternalLoopSize2, const E_type energyAdd, const bool energyWithDangle, const bool internalLoopGU)IntaRNA::InteractionEnergyinline
InteractionEnergyIdxOffset(const InteractionEnergy &energyOriginal, const size_t offset1=0, const size_t offset2=0)IntaRNA::InteractionEnergyIdxOffsetinline
internalLoopGUIntaRNA::InteractionEnergyprotected
isAccessible1(const size_t i) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
isAccessible2(const size_t i) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
isAllowedLoopRegion(const RnaSequence &seq, const size_t i, const size_t j, const size_t maxInternalLoopSize)IntaRNA::InteractionEnergyinlineprotectedstatic
isGU(const size_t i1, const size_t i2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
isInternalLoopGUallowed() constIntaRNA::InteractionEnergyinline
isValidInternalLoop(const size_t i1, const size_t j1, const size_t i2, const size_t j2) constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
maxInternalLoopSize1IntaRNA::InteractionEnergyprotected
maxInternalLoopSize2IntaRNA::InteractionEnergyprotected
offset1IntaRNA::InteractionEnergyIdxOffsetprotected
offset2IntaRNA::InteractionEnergyIdxOffsetprotected
setOffset1(size_t offset1)IntaRNA::InteractionEnergyIdxOffsetinline
setOffset2(size_t offset2)IntaRNA::InteractionEnergyIdxOffsetinline
size1() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
size2() constIntaRNA::InteractionEnergyIdxOffsetinlinevirtual
~InteractionEnergy()IntaRNA::InteractionEnergyinlinevirtual
~InteractionEnergyIdxOffset()IntaRNA::InteractionEnergyIdxOffsetinlinevirtual
Backofen Lab University of Freiburg · IntaRNA C++ API
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