IntaRNA::NussinovHandler Member List

This is the complete list of members for IntaRNA::NussinovHandler, including all inherited members.

dotBracket(const size_t from, const size_t to, const RnaSequence &seq, const size_t minLoopLength, const E_type basePairEnergy=Ekcal_2_E(-1.0))	IntaRNA::NussinovHandler	static
E2dMatrix typedef	IntaRNA::NussinovHandler
getBasePairs(const size_t from, const size_t to, const IdxMatrix &traceback, Interaction::PairingVec &pairs)	IntaRNA::NussinovHandler	static
getPbp(const size_t from, const size_t to, const RnaSequence &seq, const Z_type basePairWeight, const size_t minLoopLength, Z2dMatrix &Q, Z2dMatrix &Qb, Z2dMatrix &Ppb)	IntaRNA::NussinovHandler	static
getPu(const size_t from, const size_t to, const RnaSequence &seq, const Z_type basePairWeight, const size_t minLoopLength, Z2dMatrix &Q, Z2dMatrix &Qb, Z2dMatrix &Ppb, Z2dMatrix &Pu)	IntaRNA::NussinovHandler	static
getQ(const size_t from, const size_t to, const RnaSequence &seq, const Z_type basePairWeight, const size_t minLoopLength, Z2dMatrix &Q, Z2dMatrix &Qb)	IntaRNA::NussinovHandler	static
getQb(const size_t from, const size_t to, const RnaSequence &seq, const Z_type basePairWeight, const size_t minLoopLength, Z2dMatrix &Q, Z2dMatrix &Qb)	IntaRNA::NussinovHandler	static
IdxMatrix typedef	IntaRNA::NussinovHandler
printMatrix(std::ostream &out, const NussinovHandler::E2dMatrix &M)	IntaRNA::NussinovHandler	static
Z2dMatrix typedef	IntaRNA::NussinovHandler