| deleteStreamsOnDestruction | IntaRNA::PredictionTrackerProfileMinE | protected |
| E_INF_string | IntaRNA::PredictionTrackerProfileMinE | protected |
| energy | IntaRNA::PredictionTrackerProfileMinE | protected |
| MinEProfile typedef | IntaRNA::PredictionTrackerProfileMinE | protected |
| PredictionTracker() | IntaRNA::PredictionTracker | inline |
| PredictionTrackerProfileMinE(const InteractionEnergy &energy, const std::string &seq1streamName, const std::string &seq2streamName, const std::string &E_INF_string="NA", const std::string &sep=";") | IntaRNA::PredictionTrackerProfileMinE | |
| PredictionTrackerProfileMinE(const InteractionEnergy &energy, std::ostream *seq1stream, std::ostream *seq2stream, const std::string &E_INF_string="NA", const std::string &sep=";") | IntaRNA::PredictionTrackerProfileMinE | |
| sep_string | IntaRNA::PredictionTrackerProfileMinE | protected |
| seq1minE | IntaRNA::PredictionTrackerProfileMinE | protected |
| seq1stream | IntaRNA::PredictionTrackerProfileMinE | protected |
| seq2minE | IntaRNA::PredictionTrackerProfileMinE | protected |
| seq2stream | IntaRNA::PredictionTrackerProfileMinE | protected |
| updateOptimumCalled(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy) | IntaRNA::PredictionTrackerProfileMinE | virtual |
| updateProfile(MinEProfile &profile, const size_t i, const size_t j, const E_type E) | IntaRNA::PredictionTrackerProfileMinE | protectedstatic |
| writeProfile(std::ostream &out, const MinEProfileIterator &begin, const MinEProfileIterator &end, const RnaSequence &rna, const std::string &E_INF_string, const std::string &sep_string) | IntaRNA::PredictionTrackerProfileMinE | inlineprotectedstatic |
| ~PredictionTracker() | IntaRNA::PredictionTracker | inlinevirtual |
| ~PredictionTrackerProfileMinE() | IntaRNA::PredictionTrackerProfileMinE | virtual |
