| deleteStreamsOnDestruction | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| energy | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| NA_string | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| overallZ | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| PredictionTracker() | IntaRNA::PredictionTracker | inline |
| PredictionTrackerProfileSpotProb(const InteractionEnergy &energy, const std::string &seq1streamName, const std::string &seq2streamName, const std::string &NA_string="NA", const std::string &sep=";") | IntaRNA::PredictionTrackerProfileSpotProb | |
| PredictionTrackerProfileSpotProb(const InteractionEnergy &energy, std::ostream *seq1stream, std::ostream *seq2stream, const std::string &NA_string="NA", const std::string &sep=";") | IntaRNA::PredictionTrackerProfileSpotProb | |
| sep | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| seq1stream | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| seq1Z | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| seq2stream | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| seq2Z | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| updateOptimumCalled(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy) | IntaRNA::PredictionTrackerProfileSpotProb | virtual |
| updateProfile(ZProfile &profile, const size_t i, const size_t j, const Z_type boltzmannWeight) | IntaRNA::PredictionTrackerProfileSpotProb | protectedstatic |
| writeProfile(std::ostream &out, const ZProfileIterator &begin, const ZProfileIterator &end, const Z_type overallZ, const RnaSequence &rna, const std::string &NA_string, const std::string &sep) | IntaRNA::PredictionTrackerProfileSpotProb | inlineprotectedstatic |
| ZProfile typedef | IntaRNA::PredictionTrackerProfileSpotProb | protected |
| ~PredictionTracker() | IntaRNA::PredictionTracker | inlinevirtual |
| ~PredictionTrackerProfileSpotProb() | IntaRNA::PredictionTrackerProfileSpotProb | virtual |
