IntaRNA 3.4.1
RNA-RNA interaction prediction | C++ API
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IntaRNA::Predictor Member List

This is the complete list of members for IntaRNA::Predictor, including all inherited members.

energyIntaRNA::Predictorprotected
getMaxInteractionWidth(const size_t w, const size_t maxLoopSize)IntaRNA::Predictorinlinestatic
getZall() constIntaRNA::Predictorinline
incrementZall(const Z_type partZ)IntaRNA::Predictorinlineprotected
initOptima()=0IntaRNA::Predictorprotectedpure virtual
outputIntaRNA::Predictorprotected
predict(const IndexRange &r1=IndexRange(0, RnaSequence::lastPos), const IndexRange &r2=IndexRange(0, RnaSequence::lastPos))=0IntaRNA::Predictorpure virtual
Predictor(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker)IntaRNA::Predictorinline
predTrackerIntaRNA::Predictorprotected
reportOptima()=0IntaRNA::Predictorprotectedpure virtual
updateOptima(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE, const bool incrementZall)=0IntaRNA::Predictorprotectedpure virtual
updateZall(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE)IntaRNA::Predictorinlineprotectedvirtual
ZallIntaRNA::Predictorprotected
~Predictor()IntaRNA::Predictorinlinevirtual
Backofen Lab University of Freiburg · IntaRNA C++ API
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