IntaRNA 3.4.1
RNA-RNA interaction prediction | C++ API
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IntaRNA::PredictorEvalOnly Member List

This is the complete list of members for IntaRNA::PredictorEvalOnly, including all inherited members.

energyIntaRNA::Predictorprotected
getMaxInteractionWidth(const size_t w, const size_t maxLoopSize)IntaRNA::Predictorinlinestatic
getZall() constIntaRNA::Predictorinline
incrementZall(const Z_type partZ)IntaRNA::Predictorinlineprotected
initOptima() overrideIntaRNA::PredictorEvalOnlyprotectedvirtual
outputIntaRNA::Predictorprotected
parseInteractions(const std::string &encoding, const RnaSequence &target, const RnaSequence &query)IntaRNA::PredictorEvalOnlystatic
predict(const IndexRange &r1=IndexRange(0, RnaSequence::lastPos), const IndexRange &r2=IndexRange(0, RnaSequence::lastPos)) overrideIntaRNA::PredictorEvalOnlyvirtual
Predictor(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker)IntaRNA::Predictorinline
PredictorEvalOnly(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker, const std::vector< Interaction > &interactions)IntaRNA::PredictorEvalOnly
predTrackerIntaRNA::Predictorprotected
reportOptima() overrideIntaRNA::PredictorEvalOnlyprotectedvirtual
updateOptima(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE, const bool incrementZall) overrideIntaRNA::PredictorEvalOnlyprotectedvirtual
updateZall(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE)IntaRNA::Predictorinlineprotectedvirtual
ZallIntaRNA::Predictorprotected
~Predictor()IntaRNA::Predictorinlinevirtual