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IntaRNA 3.4.1
RNA-RNA interaction prediction | C++ API
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This is the complete list of members for IntaRNA::PredictorEvalOnly, including all inherited members.
| energy | IntaRNA::Predictor | protected |
| getMaxInteractionWidth(const size_t w, const size_t maxLoopSize) | IntaRNA::Predictor | inlinestatic |
| getZall() const | IntaRNA::Predictor | inline |
| incrementZall(const Z_type partZ) | IntaRNA::Predictor | inlineprotected |
| initOptima() override | IntaRNA::PredictorEvalOnly | protectedvirtual |
| output | IntaRNA::Predictor | protected |
| parseInteractions(const std::string &encoding, const RnaSequence &target, const RnaSequence &query) | IntaRNA::PredictorEvalOnly | static |
| predict(const IndexRange &r1=IndexRange(0, RnaSequence::lastPos), const IndexRange &r2=IndexRange(0, RnaSequence::lastPos)) override | IntaRNA::PredictorEvalOnly | virtual |
| Predictor(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker) | IntaRNA::Predictor | inline |
| PredictorEvalOnly(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker, const std::vector< Interaction > &interactions) | IntaRNA::PredictorEvalOnly | |
| predTracker | IntaRNA::Predictor | protected |
| reportOptima() override | IntaRNA::PredictorEvalOnly | protectedvirtual |
| updateOptima(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE, const bool incrementZall) override | IntaRNA::PredictorEvalOnly | protectedvirtual |
| updateZall(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE) | IntaRNA::Predictor | inlineprotectedvirtual |
| Zall | IntaRNA::Predictor | protected |
| ~Predictor() | IntaRNA::Predictor | inlinevirtual |