This is the complete list of members for IntaRNA::PredictorMfeEnsSeedOnly, including all inherited members.

BestInteractionE typedef	IntaRNA::PredictorMfe	protected
BestInteractionZ typedef	IntaRNA::PredictorMfe	protected
energy	IntaRNA::PredictorMfeEnsSeedOnly	protected
exactContribution	IntaRNA::PredictorMfeEns	protected
getMaxInteractionWidth(const size_t w, const size_t maxLoopSize)	IntaRNA::Predictor	inlinestatic
getNextBest(Interaction &curBest)	IntaRNA::PredictorMfe	protectedvirtual
getZall() const	IntaRNA::Predictor	inline
HashIdx2E typedef	IntaRNA::PredictorMfe	protected
incrementZall(const Z_type partZ)	IntaRNA::Predictor	inlineprotected
initOptima() override	IntaRNA::PredictorMfe	protectedvirtual
initSeedCandidates()	IntaRNA::PredictorMfe	protected
initZ()	IntaRNA::PredictorMfeEns	protectedvirtual
InteractionList typedef	IntaRNA::PredictorMfe	protected
isValidOutputSite(const size_t i1, const size_t j1, const size_t i2, const size_t j2) const	IntaRNA::PredictorMfe	protected
mfe4leftEnd	IntaRNA::PredictorMfe	protected
mfeInteractions	IntaRNA::PredictorMfe	protected
output	IntaRNA::PredictorMfeEnsSeedOnly	protected
ownedSeedCandidates	IntaRNA::PredictorMfe	protected
perSeedPass	IntaRNA::PredictorMfe	protected
predict(const IndexRange &r1=IndexRange(0, RnaSequence::lastPos), const IndexRange &r2=IndexRange(0, RnaSequence::lastPos)) override	IntaRNA::PredictorMfeEnsSeedOnly	virtual
Predictor(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker)	IntaRNA::Predictor	inline
PredictorMfe(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker)	IntaRNA::PredictorMfe
PredictorMfeEns(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker *predTracker)	IntaRNA::PredictorMfeEns
PredictorMfeEnsSeedOnly(const InteractionEnergy &energy, OutputHandler &output, PredictionTracker predTracker, SeedHandler seedHandler)	IntaRNA::PredictorMfeEnsSeedOnly
predictPerSeed(const IndexRange &r1, const IndexRange &r2, SeedHandlerIdxOffset &seeds, const std::function< Predictor (OutputHandler &, PredictionTracker , SeedHandler *)> &factory)	IntaRNA::PredictorMfe	protectedvirtual
predTracker	IntaRNA::PredictorMfeEns	protected
reportedInteractions	IntaRNA::PredictorMfe	protected
reportOptima() override	IntaRNA::PredictorMfeEns	protectedvirtual
seedCandidates	IntaRNA::PredictorMfe	protected
seedHandler	IntaRNA::PredictorMfeEnsSeedOnly	protected
seedLastPos1	IntaRNA::PredictorMfeEnsSeedOnly	protected
seedLastPos2	IntaRNA::PredictorMfeEnsSeedOnly	protected
traceBack(Interaction &interaction) override	IntaRNA::PredictorMfeEnsSeedOnly	protectedvirtual
updateCompleteZ(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const Z_type partFunct, const bool isHybridZ)	IntaRNA::PredictorMfeEns	protected
updateExactCompleteZ(size_t i1, size_t j1, size_t i2, size_t j2, Z_type hybrid, Z_type coefficient)	IntaRNA::PredictorMfeEns	protected
updateMfe4leftEnd(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const Interaction &curInteraction)	IntaRNA::PredictorMfe	protectedvirtual
updateOptima(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE, const bool incrementZall) override	IntaRNA::PredictorMfe	protectedvirtual
updateZ(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const Z_type partFunct, const bool isHybridZ)	IntaRNA::PredictorMfeEns	protectedvirtual
updateZall(const size_t i1, const size_t j1, const size_t i2, const size_t j2, const E_type energy, const bool isHybridE)	IntaRNA::Predictor	inlineprotectedvirtual
updateZisComplete	IntaRNA::PredictorMfeEns	protected
Z_partition	IntaRNA::PredictorMfeEns	protected
Zall	IntaRNA::Predictor	protected
~Predictor()	IntaRNA::Predictor	inlinevirtual
~PredictorMfe() override	IntaRNA::PredictorMfe	virtual
~PredictorMfeEns() override	IntaRNA::PredictorMfeEns	virtual
~PredictorMfeEnsSeedOnly() override	IntaRNA::PredictorMfeEnsSeedOnly	virtual