IntaRNA::RnaSequence Member List

This is the complete list of members for IntaRNA::RnaSequence, including all inherited members.

ambiguous	IntaRNA::RnaSequence	protected
areComplementary(const RnaSequence &s1, const RnaSequence &s2, const size_t p1, const size_t p2)	IntaRNA::RnaSequence	inlinestatic
asCodes() const	IntaRNA::RnaSequence	inline
asString() const	IntaRNA::RnaSequence	inline
bpGUcodes	IntaRNA::RnaSequence	protectedstatic
Code_type typedef	IntaRNA::RnaSequence
codeLocale	IntaRNA::RnaSequence	protectedstatic
CodeSeq_type typedef	IntaRNA::RnaSequence
getCodeForChar(const char nucleotide)	IntaRNA::RnaSequence	inlinestatic
getCodeForString(const String_type &seqString)	IntaRNA::RnaSequence	inlinestatic
getId() const	IntaRNA::RnaSequence	inline
getIndex(const long i) const	IntaRNA::RnaSequence	inline
getInOutIndex(const size_t i) const	IntaRNA::RnaSequence	inline
getReversedIndex(const size_t i) const	IntaRNA::RnaSequence	inline
getSeqNumber() const	IntaRNA::RnaSequence	inline
getUpperCase(const std::string &seqString)	IntaRNA::RnaSequence	inlinestatic
id	IntaRNA::RnaSequence	protected
idxPos0	IntaRNA::RnaSequence	protected
isAmbiguous() const	IntaRNA::RnaSequence	inline
isAmbiguous(const size_t i) const	IntaRNA::RnaSequence	inline
isGU(const RnaSequence &s1, const RnaSequence &s2, const size_t p1, const size_t p2)	IntaRNA::RnaSequence	inlinestatic
isValidSequence(const std::string &sequence)	IntaRNA::RnaSequence	inlinestatic
isValidSequenceIUPAC(const std::string &sequence)	IntaRNA::RnaSequence	inlinestatic
lastPos	IntaRNA::RnaSequence	static
operator<<	IntaRNA::RnaSequence	friend
operator==(const RnaSequence &rna2) const	IntaRNA::RnaSequence	inline
RnaSequence(const std::string &id, const std::string &seqString, const long idxPos0=1, const size_t seqNumber=1)	IntaRNA::RnaSequence	inline
seqCode	IntaRNA::RnaSequence	protected
seqNumber	IntaRNA::RnaSequence	protected
seqString	IntaRNA::RnaSequence	protected
SequenceAlphabet	IntaRNA::RnaSequence	static
SequenceAlphabetIUPAC	IntaRNA::RnaSequence	static
size() const	IntaRNA::RnaSequence	inline
String_type typedef	IntaRNA::RnaSequence
~RnaSequence()	IntaRNA::RnaSequence	inlinevirtual