IntaRNA::SeedConstraint Member List

This is the complete list of members for IntaRNA::SeedConstraint, including all inherited members.

bp	IntaRNA::SeedConstraint	protected
bpGUallowed	IntaRNA::SeedConstraint	protected
bpGUendAllowed	IntaRNA::SeedConstraint	protected
explicitSeeds	IntaRNA::SeedConstraint	protected
getBasePairs() const	IntaRNA::SeedConstraint	inline
getExplicitSeeds() const	IntaRNA::SeedConstraint	inline
getExplicitSeeds()	IntaRNA::SeedConstraint	inline
getMaxE() const	IntaRNA::SeedConstraint	inline
getMaxED() const	IntaRNA::SeedConstraint	inline
getMaxEhybrid() const	IntaRNA::SeedConstraint	inline
getMaxLength1() const	IntaRNA::SeedConstraint	inline
getMaxLength2() const	IntaRNA::SeedConstraint	inline
getMaxUnpaired1() const	IntaRNA::SeedConstraint	inline
getMaxUnpaired2() const	IntaRNA::SeedConstraint	inline
getMaxUnpairedOverall() const	IntaRNA::SeedConstraint	inline
getRanges1() const	IntaRNA::SeedConstraint	inline
getRanges1()	IntaRNA::SeedConstraint	inline
getRanges2() const	IntaRNA::SeedConstraint	inline
getRanges2()	IntaRNA::SeedConstraint	inline
isGUallowed() const	IntaRNA::SeedConstraint	inline
isGUendAllowed() const	IntaRNA::SeedConstraint	inline
isLpAllowed() const	IntaRNA::SeedConstraint	inline
lpAllowed	IntaRNA::SeedConstraint	protected
maxE	IntaRNA::SeedConstraint	protected
maxED	IntaRNA::SeedConstraint	protected
maxEhybrid	IntaRNA::SeedConstraint	protected
maxUnpaired1	IntaRNA::SeedConstraint	protected
maxUnpaired2	IntaRNA::SeedConstraint	protected
maxUnpairedOverall	IntaRNA::SeedConstraint	protected
operator<<	IntaRNA::SeedConstraint	friend
ranges1	IntaRNA::SeedConstraint	protected
ranges2	IntaRNA::SeedConstraint	protected
SeedConstraint(const size_t bp, const size_t maxUnpairedOverall, const size_t maxUnpaired1, const size_t maxUnpaired2, const E_type maxE, const E_type maxED, const E_type maxEhybrid, const IndexRangeList &ranges1, const IndexRangeList &ranges2reversed, const std::string &explicitSeeds, const bool noGUallowed, const bool noGUendAllowed, const bool noLP)	IntaRNA::SeedConstraint	inline
~SeedConstraint()	IntaRNA::SeedConstraint	inlinevirtual