IntaRNA::SeedHandlerExplicit Member List

This is the complete list of members for IntaRNA::SeedHandlerExplicit, including all inherited members.

addSeeds(Interaction &i) const	IntaRNA::SeedHandler	virtual
areLoopOverlapping(const size_t i1, const size_t i2, const size_t k1, const size_t k2) const	IntaRNA::SeedHandler	virtual
checkSeedEncoding(const std::string &seed)	IntaRNA::SeedHandlerExplicit	static
energy	IntaRNA::SeedHandler	protected
fillSeed(const size_t i1, const size_t j1, const size_t i2, const size_t j2)	IntaRNA::SeedHandlerExplicit	virtual
getConstraint() const	IntaRNA::SeedHandler	inlinevirtual
getInteractionEnergy() const	IntaRNA::SeedHandler	inlinevirtual
getSeedE(const size_t i1, const size_t i2) const	IntaRNA::SeedHandlerExplicit	virtual
getSeedLength1(const size_t i1, const size_t i2) const	IntaRNA::SeedHandlerExplicit	virtual
getSeedLength2(const size_t i1, const size_t i2) const	IntaRNA::SeedHandlerExplicit	virtual
getSeedMinBP(const std::string &seedEncoding)	IntaRNA::SeedHandlerExplicit	static
isFeasibleSeedBasePair(const size_t i1, const size_t i2, const bool atEndOfSeed=false) const	IntaRNA::SeedHandler	virtual
isSeedBound(const size_t i1, const size_t i2) const	IntaRNA::SeedHandlerExplicit	virtual
seedConstraint	IntaRNA::SeedHandler	protected
seedForLeftEnd	IntaRNA::SeedHandlerExplicit	protected
SeedHandler(const InteractionEnergy &energy, const SeedConstraint &seedConstraint)	IntaRNA::SeedHandler	inline
SeedHandlerExplicit(const InteractionEnergy &energy, const SeedConstraint &seedConstraint)	IntaRNA::SeedHandlerExplicit
traceBackSeed(Interaction &interaction, const size_t i1, const size_t i2) const	IntaRNA::SeedHandlerExplicit	virtual
updateToNextSeed(size_t &i1, size_t &i2, const size_t i1min=0, const size_t i1max=RnaSequence::lastPos, const size_t i2min=0, const size_t i2max=RnaSequence::lastPos) const	IntaRNA::SeedHandlerExplicit	virtual
~SeedHandler()	IntaRNA::SeedHandler	inlinevirtual
~SeedHandlerExplicit()	IntaRNA::SeedHandlerExplicit	virtual