IntaRNA::SeedHandlerIdxOffset Member List

This is the complete list of members for IntaRNA::SeedHandlerIdxOffset, including all inherited members.

addSeeds(Interaction &i) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
areLoopOverlapping(const size_t i1, const size_t i2, const size_t k1, const size_t k2) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
deleteOnDestruction	IntaRNA::SeedHandlerIdxOffset	protected
energy	IntaRNA::SeedHandler	protected
energyIdxOffset	IntaRNA::SeedHandlerIdxOffset	protected
fillSeed(const size_t i1, const size_t j1, const size_t i2, const size_t j2) override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
getConstraint() const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
getInteractionEnergy() const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
getOffset1() const	IntaRNA::SeedHandlerIdxOffset	inline
getOffset2() const	IntaRNA::SeedHandlerIdxOffset	inline
getOriginalSeedHandler()	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
getSeedE(const size_t i1, const size_t i2) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
getSeedLength1(const size_t i1, const size_t i2) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
getSeedLength2(const size_t i1, const size_t i2) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
guaranteesStackOnlySeeds() const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
idxOffset1	IntaRNA::SeedHandlerIdxOffset	protected
idxOffset2	IntaRNA::SeedHandlerIdxOffset	protected
isFeasibleSeedBasePair(const size_t i1, const size_t i2, const bool atEndOfSeed=false) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
isSeedBound(const size_t i1, const size_t i2) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
seedConstraint	IntaRNA::SeedHandler	protected
seedConstraintOffset	IntaRNA::SeedHandlerIdxOffset	protected
SeedHandler(const InteractionEnergy &energy, const SeedConstraint &seedConstraint)	IntaRNA::SeedHandler	inline
SeedHandlerIdxOffset(SeedHandler *seedHandler, const bool deleteOnDestruction=true)	IntaRNA::SeedHandlerIdxOffset	inline
seedHandlerOriginal	IntaRNA::SeedHandlerIdxOffset	protected
setOffset1(size_t offset1)	IntaRNA::SeedHandlerIdxOffset	inline
setOffset2(size_t offset2)	IntaRNA::SeedHandlerIdxOffset	inline
traceBackSeed(Interaction &interaction, const size_t i1, const size_t i2) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
updateToNextSeed(size_t &i1, size_t &i2, const size_t i1min=0, const size_t i1max=RnaSequence::lastPos, const size_t i2min=0, const size_t i2max=RnaSequence::lastPos) const override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual
~SeedHandler()	IntaRNA::SeedHandler	inlinevirtual
~SeedHandlerIdxOffset() override	IntaRNA::SeedHandlerIdxOffset	inlinevirtual