# Motif database

The RBPs and motifs available in RBPBench are based on the curated list of human RBP binding motifs based on the [catRAPID omics](http://service.tartaglialab.com/page/catrapid_omics2_group) database. At present RBPBench hosts 605 RBP binding motifs from 259 RBPs, including 604 MEME/DREME XML based sequence motifs and one covariance model based structure motif. Optionally, the user can add own motifs (user motifs) to the search, or define a custom motif database.
The list of current database RBPs and number of motifs per RBP are given below:

|  RBP | Number of motifs|
|------|:---------------:|
| A1CF | 2          |
| ACIN1 | 2|
| ACO1 | 1|
| ADAR | 4|
| AGGF1 | 2|
| AGO1 | 1|
| AGO2 | 2|
| AKAP1 | 1|
| AKAP8 | 1|
| ANKHD1 | 1|
| AUH | 2|
| BCCIP | 1|
| BOLL | 3|
| BUD13 | 4|
| CAPRIN1 | 1|
| CBX7 | 1|
| CDC40 | 2|
| CELF1 | 1|
| CELF2 | 2|
| CELF4 | 1|
| CELF5 | 1|
| CELF6 | 1|
| CNBP | 2|
| CNOT4 | 1|
| CPEB1 | 1|
| CPEB2 | 1|
| CPEB4 | 1|
| CPSF6 | 1|
| CPSF7 | 1|
| CSTF2 | 2|
| CSTF2T | 2|
| DAZ3 | 4|
| DAZAP1 | 4|
| DDX3X | 2|
| DDX6 | 1|
| DDX19B | 1|
| DDX24 | 2|
| DDX54 | 2|
| DDX55 | 6|
| DDX58 | 1|
| DDX59 | 1|
| DGCR8 | 1|
| DKC1 | 3|
| EFTUD2 | 1|
| EIF3D | 5|
| EIF4A3 | 3|
| EIF4B | 1|
| EIF4G2 | 4|
| ELAVL1 | 4|
| ELAVL2 | 4|
| ELAVL3 | 3|
| ELAVL4 | 3|
| ENOX1 | 1|
| ERI1 | 1|
| ESRP1 | 3|
| ESRP2 | 1|
| EWSR1 | 2|
| FAM120A | 3|
| FASTKD2 | 3|
| FBL | 1|
| FIP1L1 | 2|
| FMR1 | 5|
| FTO | 2|
| FUBP1 | 3|
| FUBP3 | 2|
| FUS | 2|
| FXR1 | 2|
| FXR2 | 5|
| G3BP1 | 2|
| G3BP2 | 1|
| GNL3 | 2|
| GPKOW | 2|
| GRSF1 | 2|
| GRWD1 | 2|
| GTF2F1 | 1|
| HLTF | 1|
| HNRNPA0 | 2|
| HNRNPA1 | 7|
| HNRNPA1L2 | 1|
| HNRNPA2B1 | 4|
| HNRNPA3 | 1|
| HNRNPAB | 3|
| HNRNPC | 2|
| HNRNPCL1 | 1|
| HNRNPD | 3|
| HNRNPDL | 3|
| HNRNPF | 1|
| HNRNPH1 | 1|
| HNRNPH2 | 1|
| HNRNPK | 2|
| HNRNPL | 5|
| HNRNPLL | 2|
| HNRNPM | 5|
| HNRNPU | 6|
| HNRNPUL1 | 4|
| IFIH1 | 1|
| IGF2BP1 | 4|
| IGF2BP2 | 2|
| IGF2BP3 | 1|
| IGHMBP2 | 1|
| ILF2 | 2|
| ILF3 | 3|
| KHDRBS1 | 2|
| KHDRBS2 | 1|
| KHDRBS3 | 2|
| KHSRP | 5|
| LARP4 | 3|
| LARP4B | 1|
| LIN28A | 1|
| LIN28B | 1|
| LSM11 | 4|
| MATR3 | 1|
| MBNL1 | 5|
| METAP2 | 1|
| MSI1 | 4|
| MSI2 | 1|
| MTPAP | 2|
| NCBP2 | 3|
| NELFE | 2|
| NKRF | 3|
| NOL12 | 2|
| NONO | 2|
| NOP56 | 1|
| NOP58 | 1|
| NOVA1 | 1|
| NOVA2 | 4|
| NPM1 | 2|
| NSUN2 | 2|
| NUMA1 | 1|
| NUP42 | 2|
| NXF1 | 1|
| OAS1 | 1|
| OBI1 | 1|
| PABPC1 | 3|
| PABPC3 | 1|
| PABPC4 | 1|
| PABPC5 | 1|
| PABPN1 | 1|
| PABPN1L | 1|
| PARP1 | 2|
| PCBP1 | 7|
| PCBP2 | 9|
| PCBP4 | 2|
| PPIE | 2|
| PPIG | 2|
| PPIL4 | 5|
| PPRC1 | 1|
| PRPF8 | 3|
| PRR3 | 2|
| PTBP1 | 5|
| PTBP2 | 1|
| PTBP3 | 1|
| PUF60 | 1|
| PUM1 | 3|
| PUM2 | 5|
| QKI | 8|
| RALY | 1|
| RALYL | 1|
| RANGAP1 | 1|
| RBFOX1 | 4|
| RBFOX2 | 2|
| RBFOX3 | 1|
| RBM3 | 1|
| RBM4 | 2|
| RBM4B | 3|
| RBM5 | 3|
| RBM6 | 1|
| RBM8A | 1|
| RBM10 | 2|
| RBM14 | 1|
| RBM15 | 1|
| RBM15B | 2|
| RBM22 | 7|
| RBM23 | 2|
| RBM24 | 1|
| RBM25 | 4|
| RBM28 | 1|
| RBM39 | 1|
| RBM41 | 1|
| RBM42 | 1|
| RBM45 | 5|
| RBM46 | 1|
| RBM47 | 1|
| RBMS1 | 1|
| RBMS2 | 1|
| RBMS3 | 5|
| RBMX | 2|
| RBMY1A1 | 1|
| RC3H1 | 2|
| TROVE2 | 7|
| RPS5 | 2|
| SAFB2 | 2|
| SAMD4A | 1|
| SART3 | 1|
| SF1 | 2|
| SF3A3 | 4|
| SF3B4 | 2|
| SFPQ | 6|
| SLTM | 1|
| SMNDC1 | 2|
| SND1 | 5|
| SNRNP70 | 1|
| SNRPA | 3|
| SNRPB2 | 1|
| SOX2 | 1|
| SRP14 | 1|
| SRP68 | 1|
| SRRM4 | 2|
| SRSF1 | 11|
| SRSF2 | 8|
| SRSF3 | 4|
| SRSF4 | 2|
| SRSF5 | 5|
| SRSF6 | 4|
| SRSF7 | 10|
| SRSF8 | 2|
| SRSF9 | 1|
| SRSF10 | 5|
| SRSF11 | 2|
| SSB | 1|
| SUB1 | 2|
| SUGP2 | 2|
| SUPV3L1 | 2|
| SYNCRIP | 1|
| TAF15 | 5|
| TARBP2 | 3|
| TARDBP | 3|
| TBRG4 | 2|
| TIA1 | 1|
| TIAL1 | 2|
| TNRC6A | 2|
| TRA2A | 5|
| TRA2B | 2|
| TRNAU1AP | 2|
| TUT1 | 2|
| U2AF1 | 4|
| U2AF2 | 3|
| UCHL5 | 3|
| UNK | 3|
| UPF1 | 1|
| WDR33 | 1|
| XPO5 | 3|
| XRCC6 | 4|
| XRN2 | 3|
| YBX1 | 3|
| YBX2 | 1|
| YBX3 | 1|
| YTHDC1 | 1|
| YWHAG | 1|
| ZC3H10 | 1|
| ZCRB1 | 1|
| ZFP36 | 2|
| ZFP36L2 | 2|
| ZNF184 | 1|
| ZNF326 | 3|
| ZNF622 | 3|
| ZNF638 | 1|
| ZRANB2 | 4|
| SLBP | 1 |