vaRRI-js — RNA-RNA Interaction Visualiser

Input

Example

Structure (dot-bracket; separate two molecules with &)

Sequence (IUPAC; separate two molecules with &)

Start index 1

Start index 2

Label interval

Coloring

Nucleotide highlighting

Background highlighting

Show G-U basepairs as dashed lines

Highlight subseq in mol. 1 (e.g. 3-8 or 3-8,15-20)

Highlight subseq in mol. 2 (e.g. 2-5)

Enable Fornac force-layout animation

Export:

Sequence 1 (strand)

Sequence 2 (strand)

Intermolecular highlight

Background highlight

Subsequence highlight

G-U basepair (dashed)