OutputConstraint.h

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#ifndef INTARNA_OUTPUTCONSTRAINT_H_
#define INTARNA_OUTPUTCONSTRAINT_H_
 
#include "IntaRNA/general.h"
#include "IntaRNA/Accessibility.h"
 
namespace IntaRNA {
 
class OutputConstraint
{
 
public:
 
    enum ReportOverlap {
        OVERLAP_NONE = 0,
        OVERLAP_SEQ1 = 1,
        OVERLAP_SEQ2 = 2,
        OVERLAP_BOTH = 3
    };
 
 
public:
 
    const size_t reportMax;
 
    const ReportOverlap reportOverlap;
 
    const E_type maxE;
 
    const E_type deltaE;
 
    const bool bestSeedOnly;
 
    const bool noLP;
 
    const bool noGUend;
 
    const bool needZall;
 
    const bool needBPs;
 
    const E_type maxED;
 
public:
 
    OutputConstraint(     const size_t reportMax = 1
                        , const ReportOverlap reportOverlap = OVERLAP_BOTH
                        , const E_type maxE = 0.0
                        , const E_type deltaE = E_INF
                        , const bool bestSeedOnly = false
                        , const bool noLP = false
                        , const bool noGUend = false
                        , const bool needZall = false
                        , const bool needBPs = true
                        , const E_type maxED = Accessibility::ED_UPPER_BOUND);
 
    virtual ~OutputConstraint();
};
 
} // namespace
 
#endif /* OUTPUTCONSTRAINT_H_ */