OutputHandlerSeedCandidates.h

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#ifndef INTARNA_OUTPUTHANDLERSEEDCANDIDATES_H_
#define INTARNA_OUTPUTHANDLERSEEDCANDIDATES_H_
 
#include "IntaRNA/OutputHandler.h"
#include <unordered_map>
#include <vector>
 
namespace IntaRNA {
 
class OutputHandlerSeedCandidates : public OutputHandler {
public:
    explicit OutputHandlerSeedCandidates(const OutputConstraint & constraint);
    void add(const Interaction & interaction) override;
    void addSeed(const Interaction::BasePair & seed, const Interaction & interaction);
    void report(OutputHandler & destination) const;
    void clear();
private:
    std::unordered_map<Interaction::BasePair, std::vector<Interaction>, Interaction::BasePair::Hash> candidates;
};
 
} // namespace IntaRNA
#endif