OutputHandlerText.h

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#ifndef INTARNA_OUTPUTHANDLERTEXT_H_
#define INTARNA_OUTPUTHANDLERTEXT_H_
 
#include "IntaRNA/OutputConstraint.h"
#include "IntaRNA/OutputHandler.h"
#include "IntaRNA/InteractionEnergy.h"
 
#include <iostream>
 
namespace IntaRNA {
 
class OutputHandlerText: public OutputHandler {
public:
 
    OutputHandlerText( const OutputConstraint & outConstraint
                , std::ostream & out
                , const InteractionEnergy & energy
                , const size_t flankingLength = 10
                , const bool detailedOutput = false
                );
 
    virtual ~OutputHandlerText();
 
    virtual
    void
    add( const Interaction & interaction );
 
protected:
 
    using OutputHandler::reportedInteractions;
 
    using OutputHandler::Z;
 
    std::ostream & out;
 
    const InteractionEnergy & energy;
 
    const size_t flankingLength;
 
    const bool detailedOutput;
 
};
 
 
 
} // namespace
 
#endif /* OUTPUTHANDLERTEXT_H_ */