PredictorEvalOnly.h

Go to the documentation of this file.

#ifndef INTARNA_PREDICTOREVALONLY_H_
#define INTARNA_PREDICTOREVALONLY_H_
 
#include "IntaRNA/Predictor.h"
 
#include <string>
#include <vector>
 
namespace IntaRNA {
 
class PredictorEvalOnly : public Predictor {
public:
 
    PredictorEvalOnly( const InteractionEnergy & energy, OutputHandler & output,
            PredictionTracker * predTracker, const std::vector<Interaction> & interactions );
 
    void predict( const IndexRange & r1 = IndexRange(0,RnaSequence::lastPos),
            const IndexRange & r2 = IndexRange(0,RnaSequence::lastPos) ) override;
 
    static std::vector<Interaction> parseInteractions( const std::string & encoding,
            const RnaSequence & target, const RnaSequence & query );
 
protected:
    void initOptima() override;
    void updateOptima( const size_t i1, const size_t j1,
            const size_t i2, const size_t j2, const E_type energy,
            const bool isHybridE, const bool incrementZall ) override;
    void reportOptima() override;
 
private:
    std::vector<Interaction> interactions;
};
 
} // namespace IntaRNA
 
#endif