#include <AccessibilityArchive.h>

Public Types
typedef UpperBandedMatrix< E_type >	EdMatrix

Public Member Functions
	AccessibilityArchive (const Accessibility &source, const EdMatrix *matrix=nullptr)

	AccessibilityArchive (const RnaSequence &sequence, size_t maxLength, EdMatrix &target)

size_t	getMaxLength () const

Friends
class	boost::serialization::access

Detailed Description

Serialization view of the logical accessibility matrix, independent of its physical storage. Version 1 stores exact internal ED integers, in rows of increasing start position and interval length, including maxLength+1 for dangling ends. Only valid cells are stored. Matrix-backed saves and full-band loads use row views directly; generic saves and discarded input tails need O(maxLength) scratch memory. The version 1 archive layout is unchanged.

The input sequence and requested band bound allocations on load. Native Boost binary archives require a compatible architecture and Boost version. This is an internal file-format helper, not an installed public interface.

Member Typedef Documentation

◆ EdMatrix

typedef UpperBandedMatrix<E_type> IntaRNA::AccessibilityArchive::EdMatrix

Constructor & Destructor Documentation

◆ AccessibilityArchive() [1/2]

IntaRNA::AccessibilityArchive::AccessibilityArchive	(	const Accessibility &	source,
		const EdMatrix *	matrix = `nullptr`
	)

inlineexplicit

Create a read-only serialization view.

Parameters

source	accessibility data, alive until serialization finishes
matrix	optional non-owning view of the source's unconstrained ED values; nullptr or non-empty constraints select the generic getED() path

◆ AccessibilityArchive() [2/2]

IntaRNA::AccessibilityArchive::AccessibilityArchive	(	const RnaSequence &	sequence,
		size_t	maxLength,
		EdMatrix &	target
	)

inline

Create a loading view; target is resized to the requested available band.

Member Function Documentation

◆ getMaxLength()

size_t IntaRNA::AccessibilityArchive::getMaxLength ( ) const

inline

Return the interaction length retained after loading.

Friends And Related Symbol Documentation

◆ boost::serialization::access

friend class boost::serialization::access

friend

The documentation for this class was generated from the following file:

src/IntaRNA/AccessibilityArchive.h

Public Types

Public Member Functions

Friends