Inheritance diagram for IntaRNA::AccessibilityDisabled:

Collaboration diagram for IntaRNA::AccessibilityDisabled:

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Public Member Functions
	AccessibilityDisabled (const RnaSequence &sequence, const size_t maxLength, const AccessibilityConstraint *const accConstr)

virtual	~AccessibilityDisabled ()

virtual E_type	getED (const size_t from, const size_t to) const

Public Member Functions inherited from IntaRNA::Accessibility
	Accessibility (const RnaSequence &sequence, const size_t maxLength, const AccessibilityConstraint *const accConstr)

virtual	~Accessibility ()

virtual const RnaSequence &	getSequence () const

virtual size_t	getMaxLength () const

virtual const AccessibilityConstraint &	getAccConstraint () const

void	writeRNAplfold_Pu_text (std::ostream &out, const Z_type RT) const

void	writeRNAplfold_ED_text (std::ostream &out) const

virtual void	writeBinary (std::ostream &out) const

IndexRangeList	decomposeByMaxED (const size_t maxRangeLength, const size_t winSize, const size_t minRangeLength) const

void	decomposeByMaxED (IndexRangeList &ranges, const E_type maxED, const size_t minRangeLength) const

Additional Inherited Members
Static Public Attributes inherited from IntaRNA::Accessibility
static const E_type	ED_UPPER_BOUND
	upper bound for all ED return values

Protected Member Functions inherited from IntaRNA::Accessibility
void	writeBinary (std::ostream &out, const UpperBandedMatrix< E_type > *matrix) const

virtual void	checkIndices (const size_t from, const size_t to) const

void	writeRNAplfold_text (std::ostream &out, const Z_type RT, const bool writeProbs) const

Protected Attributes inherited from IntaRNA::Accessibility
const RnaSequence &	seq
	the RNA sequence the accessibilities correspond to

const size_t	maxLength
	the maximal length of an unpaired regions to be considered

AccessibilityConstraint	accConstraint
	accessibility constraint

Detailed Description

Implements the Accessibility interface but disables ED value computation, i.e. all ED values are set to zero.

Constructor & Destructor Documentation

IntaRNA::AccessibilityDisabled::AccessibilityDisabled	(	const RnaSequence &	sequence,
		const size_t	maxLength,
		const AccessibilityConstraint *const	accConstr
	)

inline

Construction

Parameters

sequence	the sequence the accessibility data belongs to
maxLength	the maximal length of accessible regions to be considered. 0 defaults to the sequence's length.
accConstr	optional accessibility constraint

IntaRNA::AccessibilityDisabled::~AccessibilityDisabled ( )

inlinevirtual

destruction

E_type IntaRNA::AccessibilityDisabled::getED	(	const size_t	from,
		const size_t	to
	)		const

inlinevirtual

Always returns a zero accessibility energy value.

Parameters

from	the start index of the regions (from <= to)
to	the end index of the regions (to <= seq.length())

The documentation for this class was generated from the following file: