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IntaRNA 3.4.1
RNA-RNA interaction prediction | C++ API
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#include <InteractionEnergy.h>
Public Attributes | |
| E_type | loops |
| the energy for all intermolecular loops | |
| E_type | init |
| the energy penalty for initiating the interaction | |
| E_type | ED1 |
| the energy penalty for making the interaction site accessible in seq1 | |
| E_type | ED2 |
| the energy penalty for making the interaction site accessible in seq2 | |
| E_type | dangleLeft |
| the energy for the dangling ends at the left end of the interaction | |
| E_type | dangleRight |
| the energy for the dangling ends at the right end of the interaction | |
| E_type | endLeft |
| the energy penalty for the left end of the interaction | |
| E_type | endRight |
| the energy penalty for the right end of the interaction | |
| E_type | energyAdd |
| the energy shift requested by the user | |
Container that provides the different energy contributions for an interaction
| E_type IntaRNA::InteractionEnergy::EnergyContributions::dangleLeft |
the energy for the dangling ends at the left end of the interaction
| E_type IntaRNA::InteractionEnergy::EnergyContributions::dangleRight |
the energy for the dangling ends at the right end of the interaction
| E_type IntaRNA::InteractionEnergy::EnergyContributions::ED1 |
the energy penalty for making the interaction site accessible in seq1
| E_type IntaRNA::InteractionEnergy::EnergyContributions::ED2 |
the energy penalty for making the interaction site accessible in seq2
| E_type IntaRNA::InteractionEnergy::EnergyContributions::endLeft |
the energy penalty for the left end of the interaction
| E_type IntaRNA::InteractionEnergy::EnergyContributions::endRight |
the energy penalty for the right end of the interaction
| E_type IntaRNA::InteractionEnergy::EnergyContributions::energyAdd |
the energy shift requested by the user
| E_type IntaRNA::InteractionEnergy::EnergyContributions::init |
the energy penalty for initiating the interaction
| E_type IntaRNA::InteractionEnergy::EnergyContributions::loops |
the energy for all intermolecular loops
1.9.8